Full BASSr run with sample selection
Source:R/Full_Run_w_SampleSelect.R
run_full_BASS_w_selection-defunct.RdRunning this function will run BASS on both study areas and sample units within those study areas. It will return a selection of sample units with associated costs and habitats.
Arguments
- study_areas_hab_cost
A list of study area hexagons, costs, and habitat characteristics. See naming above.
- Number_of_Study_areas
Number of Study Areas to select
- Number_of_sample_units
Number of Sample Units to select
- Size_of_HSS
Size of they Hypothetical Sample Set
- Number_of_HSS
Number of iterations in the hypothetical sample set
- Weight_of_benfit
Weight of benefit in selection probabilties.
- LandCoverType
String with identifer for both the land cover hexagons and their code within that tibble
- RemovedLayers_
Layers to remove from benefit calculation must be in format of c(-var1, -var2, -var3)
- Area_of_interest
Area of interest in tibble with StudyAreaID
- RandomSeed
Random seet to use in GRTS
- calculate_benefits
Should you calculate benefits or are they included in benefit_df
- only_calculate_benefits
Do you only want to calculate benefits or complete the full run
- benefit_dfs
If calculate_benefits is TRUE need some data.frames with benefits.
- returnALL
do you return the GRTS object, as well as the selection probs. (Can be used later to calculate spatial balance)
- oversample
Proportion of sites to oversample, used for both study areas and sample units
- weighted_benefits_df
list of data frames with weight and land covers for benefit calculation
- Non
random set of study areas and sample units in form of named list.